PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g06210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family RAV
Protein Properties Length: 358aa    MW: 39264.2 Da    PI: 9.3979
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g06210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-144896155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Vang06g06210.1 48 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 96
                    89****9888.8*********3.....5**********99*************98 PP

2B3932.2e-29169267183
                     EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                     f+k+ tpsdv+k++rlv+pk++ae+h                    ++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+n+L++gD 
  Vang06g06210.1 169 FEKTVTPSDVGKLNRLVIPKQHAEKHfplssgsgsgvsprtvAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNNLRAGDA 263
                     99****************************9999877777774455699********************************************** PP

                     EEEE CS
              B3  80 vvFk 83 
                     v F 
  Vang06g06210.1 264 VRFF 267
                     *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-2448103No hitNo description
SuperFamilySSF541712.42E-1748104IPR016177DNA-binding domain
PfamPF008476.8E-94896IPR001471AP2/ERF domain
SMARTSM003805.1E-2949110IPR001471AP2/ERF domain
PROSITE profilePS5103220.3549104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2049104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.9E-39163284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-29167281IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-28168278No hitNo description
PROSITE profilePS5086313.437169284IPR003340B3 DNA binding domain
PfamPF023621.9E-26169267IPR003340B3 DNA binding domain
SMARTSM010191.2E-22169283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDAATSTDET TTTSESLSLP PNQSPPPLIR IEPDAVSGEA ESRKLPSSKY KGVVPQPNGR  60
WGAQIYEKHQ RVWLGTFNEE DEAARAYDIA AQRFRGRDAV TNFKPLAGAG DDAESEFLNS  120
HSKSEIVDML RKHTYDDELQ QSTRGGRRRR DAEAASCGAY DVKAREQLFE KTVTPSDVGK  180
LNRLVIPKQH AEKHFPLSSG SGSGVSPRTV AAAAAKGVLL NFEDVGGKVW RFRYSYWNSS  240
QSYVLTKGWS RFVKDNNLRA GDAVRFFKST GPDRQLYIDC KARSGGGICE LNNNNAGGLF  300
VPVGPVVEPV QMVRLFGVNL LKLPGSDGVR VGYEGKRKEM ELFAFECSKK LKVIGAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-5416628811122DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335351KRKEMELFAFECSKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143801.10.0hypothetical protein PHAVU_007G102800g
SwissprotQ9C6M51e-130RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A0S3SP310.0A0A0S3SP31_PHAAN; Uncharacterized protein
STRINGGLYMA20G32730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-126RAV family protein